# The Dixon-Coles model, part 4: A trick to speed up estimation

In the previous installments in this series on implementing the Dixon-Coles model I complained a bit about the time it took to estimate the parameters. In the original implementation in part 1 it took about 40 seconds. Now 40 seconds is not much to complain about, there are a whole lot of other models and algorithms that takes much much longer time to fit (for my master’s I had some computations that took several months). Still, I wanted to make a few improvements.

The approach I described in part 3 is quite acceptable, I think, especially since it takes less than a second to fit the model. But still, I wanted to make some improvements to my original implementation.

There are several reasons for the estimation procedure being slow. I used a general purpose optimizer instead of a tailor-made algorithm, and I didn’t provide the optimizer with a function of the derivative of the model likelihood function, nor the function defining the constraint. This means that the optimizer have to estimate the derivatives by doing a lot of evaluations of the two functions with slight changes in the parameters. The most important speed bump, however, is probably due to how I implemented the constraint that all the average of the attack parameters should equal 1.

The alabama package I used relied on a technique called Lagrange multipliers, which is a very general method for constrained optimization. Instead of relying on general constrained optimization procedures, there is a trick commonly used in linear models with sum-to-zero constrained categorical parameters that we also can use here.

There has been some discussion and confusion in the comments about how categorical variables are coded and how R presents the results of the glm function. A thorough discussion of this is best left for another time, but let me explain how the sum-to-zero constraint is implemented in linear models. We will fit the model with this constraint and then make some adjustments later on to get the correct average-is-one constraint.

The sum-to-zero constraint basically says that the sum of all the parameters for a categorical variable must equal to zero:

$$\sum_{i=1} \theta_i = 0$$

If we for example have three levels, we can write out the equation like this:

$$\theta_1 + \theta_2 + \theta_3 = 0$$

If we subtract $$\theta_3$$ and multiply both sides of the equation by minus 1 we get

$$– \theta_1 – \theta_2 = \theta_3$$

Notice how we can write one of the parameters as a simple linear function of the other parameters. We can use this result to construct the design matrix for the categorical variable, incorporating the sum-to-zero constraint (exactly which parameter or level we chose to be a function of the others doesn’t matter, the end results does not differ). Suppose we have the following observations of a three-level categorical variable:

$$\begin{bmatrix} A & A & B & B & C & C \end{bmatrix}^T$$

We can then construct the following design matrix:

$$\begin{bmatrix} 1 & 0 \\ 1 & 0 \\ 0 & 1 \\ 0 & 1 \\ -1 & -1 & \\ -1 & -1 & \end{bmatrix}$$

Notice that we only need two columns (i.e. two variables) to encode the three levels. Since the last parameter is a function of the two other it is redundant. Also notice how the observations in the two last rows, corresponding to the $$C$$ observations, will influence the estimation of all the other parameters for this variable. When the two parameters are estimated, the last parameter can be obtained using the result from above relating the last parameter to all the other.

In the Dixon-Coles paper they used the constraint that the average of the attack parameters should be 1. This is not quite the same as the sum-to-zero constraint, but for prediction, it does not matter exactly which constraint we use. Anyway, I will explain later how we can fix this.

To use this trick in the Dixon-Coles implementation we need to make the following changes to our code from part 1. Obviously the first thing we need to change is how the design matrices in the DCmodelData function is computed. We need four matrices now, since the number of parameters estimated directly is different for the attack and defense parameters. Notice how I chose the last of team that appear last in the team.names vector. The teams get sorted alphabetically, so for the 2011-12 Premier League data this is is Wolves.

DCmodelData <- function(df){

team.names <- unique(c(levels(df$HomeTeam), levels(df$AwayTeam)))

# attack, with sum-to-zero constraint
## home
hm.a <- model.matrix(~ HomeTeam - 1, data=df)
hm.a[df$HomeTeam == team.names[length(team.names)], ] <- -1 hm.a <- hm.a[,1:(length(team.names)-1)] # away am.a <- model.matrix(~ AwayTeam -1, data=df) am.a[df$AwayTeam == team.names[length(team.names)], ] <- -1
am.a <- am.a[,1:(length(team.names)-1)]

# defence, same as before
hm.d <- model.matrix(~ HomeTeam - 1, data=df)
am.d <- model.matrix(~ AwayTeam -1, data=df)

return(list(homeTeamDMa=hm.a, homeTeamDMd=hm.d,
awayTeamDMa=am.a, awayTeamDMd=am.d,
homeGoals=df$FTHG, awayGoals=df$FTAG,
teams=team.names))
}


Some changes to the DCoptimFn function is also needed, so it properly handles the changes we made to the design matrices.

# I don't bother showing the rest of the function
nteams <- length(DCm$teams) attack.p <- matrix(params[3:(nteams+1)], ncol=1) #one column less defence.p <- matrix(params[(nteams+2):length(params)], ncol=1) # need to multiply with the correct matrices lambda <- exp(DCm$homeTeamDMa %*% attack.p + DCm$awayTeamDMd %*% defence.p + home.p) mu <- exp(DCm$awayTeamDMa %*% attack.p + DCm$homeTeamDMd %*% defence.p)  We also need to make a the appropriate adjustments to the vectors with the initial parameter values, so that they have the correct lengths. dcm <- DCmodelData(data) nteams <- length(dcm$teams)

#initial parameter estimates
attack.params <- rep(.1, times=nteams-1) # one less parameter
defence.params <- rep(-0.8, times=nteams)
home.param <- 0.06
rho.init <- 0.03
par.inits <- c(home.param, rho.init, attack.params, defence.params)

#informative names
#skip the last team
names(par.inits) <- c('HOME', 'RHO',
paste('Attack', dcm$teams[1:(nteams-1)], sep='.'), paste('Defence', dcm$teams, sep='.'))


With these changes we can simply use the built-in optim function in R. There is no need for the DCattackConstr function anymore, or a third party package, since we built the constraint right into the design matrices.

res <- optim(par=par.inits, fn=DCoptimFn, DCm=dcm, method='BFGS')


This takes about 6-7 seconds on my laptop, a decent improvement to the 40 seconds it took before. If you take a look at the resulting parameter estimates in res$par you will see that the attack parameter for Wolves is missing. As I explained earlier, this parameter is easy to find. It is also easy to correct all the parameter estimates so that they become the same as if we had a mean-is-one constraint on the attack parameters. This is done by increasing the attack parameters by one, and decreasing the defense parameters by one. The reason it is that simple is that the sum-to-zero constraint is equivalent with a mean-is-zero constraint. parameters <- res$par

#compute Wolves attack parameter
missing.attack <- sum(parameters[3:(nteams+1)]) * -1

#put it in the parameters vector
parameters <- c(parameters[1:(nteams+1)], missing.attack, parameters[(nteams+2):length(parameters)])
names(parameters)[nteams+2] <- paste('Attack.', dcm$teams[nteams], sep='') #increase attack by one parameters[3:(nteams+2)] <- parameters[3:(nteams+2)] + 1 #decrease defence by one parameters[(nteams+3):length(parameters)] <- parameters[(nteams+3):length(parameters)] - 1  # The Dixon-Coles model for predicting football matches in R (part 3) About a moth ago Martin Eastwood of the pena.lt/y blog put up some slides from a talk he gave about predicting football results in R. He presented in detail the independent Poisson regression model, and how to implement it. He also briefly mentioned and showed the bivariate adjustments in the Dixon-Coles model. I was curious about how he had implemented it since I had just finished my own implementation. In the comments he said that he used a two-stage approach, first estimating the attack and defense parameters using the independent Poisson model, and then estimating the rho parameter by it self. This method may be less accurate than fitting the complete model, but it will probably be more accurate than the independent Poisson model. It is without a doubt faster and easier to implement. We start with loading the data, and then making a new data.frame that contains two rows per match, as described in my post about the independent Poisson model. dta <- read.csv('FAPL1112.csv') # Data formated for the independent model # Store in new variable, we need the data in original format later dta.indep <- data.frame(Team=as.factor(c(as.character(dta$HomeTeam),
as.character(dta$AwayTeam))), Opponent=as.factor(c(as.character(dta$AwayTeam),
as.character(dta$HomeTeam))), Goals=c(dta$FTHG, dta$FTAG), Home=c(rep(1, dim(dta)[1]), rep(0, dim(dta)[1])))  Now fit the model: m <- glm(Goals ~ Home + Team + Opponent, data=dta.indep, family=poisson())  Since we now have estimated the attack, defense and home parameters we can use the built-in functions in R to calculate the expected home and away scores (lambda and mu). To calculate lambda and mu, we use the fitted function. I organized the data so that all the rows with the goals scored by the home team comes before all the rows with the goals by the away teams. Whats more, the match in the first row in the home team part corresponds to the match in the first row in the away team part, so it is easy to get the corresponding expectations correct. expected <- fitted(m) home.expected <- expected[1:nrow(dta)] away.expected <- expected[(nrow(dta)+1):(nrow(dta)*2)]  To estimate the rho parameter we can use the tau and DClogLik function we defined in part 1. We just wrap it inside a function we pass to the built in optimizer in R: DCoptimRhoFn <- function(par){ rho <- par[1] DClogLik(dta$FTHG, dta$FTAG, home.expected, away.expected, rho) } res <- optim(par=c(0.1), fn=DCoptimRhoFn, control=list(fnscale=-1), method='BFGS')  The optimization finishes in an instant. As before we get the parameter values by looking at res$par. The estimated rho parameter is -0.126, which is reassuringly not that different from the -0.134 we got from the full model. This is is also about the same values Justin Worrall gets at his sportshacker.net blog.

To make predictions we can reuse most of the code from part 2. The only substantial difference is how we calculate the expected goals, which is a bit simpler this time:

# Expected goals home
lambda <- predict(m, data.frame(Home=1, Team='Bolton', Opponent='Blackburn'), type='response')

# Expected goals away
mu <- predict(m, data.frame(Home=0, Team='Blackburn', Opponent='Bolton'), type='response')


This two-stage approach is much faster and simpler. We don’t have to manually create the design matrices and use matrix algebra to calculate the expected scores. We also don’t have to write as much code to keep track of all the parameters. I haven’t really compared all the different models against each other, so I can’t say which one makes the best predictions, but my guess is that this two-stage approach gives results similar to the fully specified Dixon-Coles model.

# The Dixon-Coles model for predicting football matches in R (part 2)

Part 1 ended with running the optimizer function to estimate the parameters in the model:

library(alabama)
res <- auglag(par=par.inits, fn=DCoptimFn, heq=DCattackConstr, DCm=dcm)

# Take a look at the parameters
res$par  In part 1 I fitted the model to data from the 2011-12 Premier League season. Now it’s time to use the model to make a prediction. As an example I will predict the result of Bolton playing at home against Blackburn. The first thing we need to do is to calculate the mu and lambda parameters, which is (approximately anyway) the expected number of goals scored by the home and away team. To do this wee need to extract the correct parameters from the res$par vector. Recall that I in the last post gave the parameters informative names that consists of the team name prefixed by either Attack or Defence.
Also notice that I have to multiply the team parameters and then exponentiate the result to get the correct answer.

Update: For some reason I got the idea that the team parameters should be multiplied together, instead of added together, but I have now fixed the code and the results.

# Expected goals home
lambda <- exp(res$par['HOME'] + res$par['Attack.Bolton'] + res$par['Defence.Blackburn']) # Expected goals away mu <- exp(res$par['Attack.Blackburn'] + res$par['Defence.Bolton'])  We get that Bolton is expected to score 2.07 goals and Blackburn is expected to score 1.59 goals. Since the model assumes dependencies between the number of goals scored by the two teams, it is insufficient to just plug the lambda and mu parameters into R’s built-in Poisson function to get the probabilities for the number of goals scored by the two teams. We also need to incorporate the adjustment for the low-scoring results as well. One strategy to do this is to first create a matrix based on the simple independent Poisson distributions: maxgoal <- 6 # will be useful later probability_matrix <- dpois(0:maxgoal, lambda) %*% t(dpois(0:maxgoal, mu))  The number of home goals follows the vertical axis and the away goals follow the horizontal. Now we can use the estimated dependency parameter rho to create a 2-by-2 matrix with scaling factors, that is then element-wise multiplied with the top left elements of the matrix calculated above: Update: Thanks to Mike who pointed out a mistake in this code. scaling_matrix <- matrix(tau(c(0,1,0,1), c(0,0,1,1), lambda, mu, res$par['RHO']), nrow=2)
probability_matrix[1:2, 1:2] <- probability_matrix[1:2, 1:2] * scaling_matrix


With this matrix it is easy to calculate the probabilities for the three match outcomes:

HomeWinProbability <- sum(probability_matrix[lower.tri(probability_matrix)])
DrawProbability <- sum(diag(probability_matrix))
AwayWinProbability <- sum(probability_matrix[upper.tri(probability_matrix)])


This gives a probability of 0.49 for home win, 0.21 for draw and 0.29 for away win.

Calculating the probabilities for the different goal differences is a bit trickier. The probabilities for each goal difference can be found by adding up the numbers on the diagonals, with the sum of the main diagonal being the probability of a draw.

awayG <- numeric(maxgoal)
for (gg in 2:maxgoal){
awayG[gg-1] <- sum(diag(probability_matrix[,gg:(maxgoal+1)]))
}
awayG[maxgoal] <- probability_matrix[1,(maxgoal+1)]

homeG <- numeric(maxgoal)
for (gg in 2:maxgoal){
homeG[gg-1] <- sum(diag(probability_matrix[gg:(maxgoal+1),]))
}
homeG[maxgoal] <- probability_matrix[(maxgoal+1),1]

goaldiffs <- c(rev(awayG), sum(diag(probability_matrix)), homeG)
names(goaldiffs) <- -maxgoal:maxgoal


It is always nice to plot the probability distribution:

We can also see compare this distribution with the distribution without the Dixon-Coles adjustment (i.e. the goals scored by the two teams are independent):

As expected, we see that the adjustment gives higher probability for draw, and lower probabilities for goal differences of one goal.

# The Dixon-Coles model for predicting football matches in R (part 1)

When it comes to Poisson regression models for football results, the 1997 paper Modelling Association Football Scores and Inefficiencies in the Football Betting Market (pdf) by Dixon and Coles is often mentioned. In this paper the authors describe an improvement of the independent goals model. The improvement consists of modeling a dependence between the probabilities for the number of goals less than 2 for both teams. They also improve the model by incorporating a time perspective, so that matches played a long time a go does not have as much influence on the parameter estimates.

The model by Dixon and Coles is not as easy to fit as the independent Poisson model I have described earlier. There is no built-in function in R that can estimate it’s parameters, and the authors provide little details about how to implement it. Mostly as an exercise, I have implemented the model in R, but without the time down-weighting scheme.

The estimating procedure uses a technique called maximum likelihood. This is perhaps the most commonly used method for estimating parameters in statistical models. The way it works is that you specify a way to calculate the likelihood of your data for a given set of parameters, and then you need to find the set of parameters that gives the highest possible likelihood of your data. The independent Poisson model is also fitted using a maximum likelihood method. The difference here is that the likelihood used by Dixon and Coles is non-standard.

The model is pretty much similar to other regression models I have discussed. Each team has an attack and a defense parameter, and from a function of these the expected number of goals for each team in a match is calculated. For the rest of this post I am going to assume you have read the paper. There is a link to it in the first paragraph.

The most obvious thing we have to do is to implement the function referred to by the greek letter Tau. This is the function that, dependent on the Rho parameter, computes the degree in which the probabilities for the low scoring goals changes.

tau <- Vectorize(function(xx, yy, lambda, mu, rho){
if (xx == 0 & yy == 0){return(1 - (lambda*mu*rho))
} else if (xx == 0 & yy == 1){return(1 + (lambda*rho))
} else if (xx == 1 & yy == 0){return(1 + (mu*rho))
} else if (xx == 1 & yy == 1){return(1 - rho)
} else {return(1)}
})


We can now make a function for the likelihood of the data. A common trick when implementing likelihood functions is to use the log-likelihood instead. The reason is that when the probabilities for each data point for a given set of parameters are multiplied together, they will be too small for the computer to handle. When the probabilities are log-transformed you can instead just add them together.

What this function does is that it takes the vectors of mu (expected home goals) and lambda (expected away goals), Rho, and the vectors of observed home and away goals, and computes the log-likelihood for all the data.

DClogLik <- function(y1, y2, lambda, mu, rho=0){
#rho=0, independence
#y1: home goals
#y2: away goals
sum(log(tau(y1, y2, lambda, mu, rho)) + log(dpois(y1, lambda)) + log(dpois(y2, mu)))
}


The team specific attack and defense parameters are not included in the log-likelihood function. Neither is the code that calculates the expected number of goals for each team in a match (lambda and mu). Before we can calculate these for each match, we need to do some data wrangling. Here is a function that takes a data.frame formated like the data from football-data.co.uk, and returns a list with design matrices and vectors with the match results.

DCmodelData <- function(df){

hm <- model.matrix(~ HomeTeam - 1, data=df, contrasts.arg=list(HomeTeam='contr.treatment'))
am <- model.matrix(~ AwayTeam -1, data=df)

team.names <- unique(c(levels(df$HomeTeam), levels(df$AwayTeam)))

return(list(
homeTeamDM=hm,
awayTeamDM=am,
homeGoals=df$FTHG, awayGoals=df$FTAG,
teams=team.names
))
}


Now we create a function that calculates the log-likelihod from a set of parameters and the data we have. First it calculates the values for lambda and mu for each match, then it passes these and the number of goals scored in each match to the log-likelihood function.

This function needs to be written in such a way that it can be used by another function that will find the parameters that maximizes the log-likelihood. First, all the parameters needs to be given to a single argument in the form of a vector (the params argument). Also, the log-likelihood is multiplied by -1, since the optimization function we are going to use only minimizes, but we want to maximize.

DCoptimFn <- function(params, DCm){

home.p <- params[1]
rho.p <- params[2]

nteams <- length(DCm$teams) attack.p <- matrix(params[3:(nteams+2)], ncol=1) defence.p <- matrix(params[(nteams+3):length(params)], ncol=1) lambda <- exp(DCm$homeTeamDM %*% attack.p + DCm$awayTeamDM %*% defence.p + home.p) mu <- exp(DCm$awayTeamDM %*% attack.p + DCm$homeTeamDM %*% defence.p) return( DClogLik(y1=DCm$homeGoals, y2=DCm$awayGoals, lambda, mu, rho.p) * -1 ) }  One more thing we need before we start optimizing is a function that helps the optimizer handle the constraint that all the attack parameters must sum to 1. If this constraint isn’t given, it will be impossible to find a unique set of parameters that maximizes the likelihood. DCattackConstr <- function(params, DCm, ...){ nteams <- length(DCm$teams)
attack.p <- matrix(params[3:(nteams+2)], ncol=1)
return((sum(attack.p) / nteams) - 1)
}


Now we are finally ready to find the parameters that maximizes the likelihood based on our data. First, load the data (in this case data from the 2011-12 premier league), and properly handle it with our DCmodelData function:

dta <- read.csv('FAPL1112.csv')
dcm <- DCmodelData(dta)


Now we need to give a set of initial estimates of our parameters. It is not so important what specific values these are, but should preferably be in the same order of magnitude as what we think the estimated parameters should be. I set all attack parameters to 0.1 and all defense parameters to -0.8.

#initial parameter estimates
attack.params <- rep(.01, times=nlevels(dta$HomeTeam)) defence.params <- rep(-0.08, times=nlevels(dta$HomeTeam))
home.param <- 0.06
rho.init <- 0.03
par.inits <- c(home.param, rho.init, attack.params, defence.params)
#it is also usefull to give the parameters some informative names
names(par.inits) <- c('HOME', 'RHO', paste('Attack', dcm$teams, sep='.'), paste('Defence', dcm$teams, sep='.'))


To optimize with equality constraints (all attack parameters must sum to 1) we can use the auglag function in the alabama package. This takes about 40 seconds to run on my laptop, much longer than the independent Poisson model fitted with the built in glm function. This is because the auglag function uses some general purpose algorithms that can work with a whole range of home-made functions, while the glm function is implemented with a specific set of models in mind.

library(alabama)
res <- auglag(par=par.inits, fn=DCoptimFn, heq=DCattackConstr, DCm=dcm)


Voilà! Now the parameters can be found by the command res$par. In a follow-up post I will show how we can use the model to make prediction of match outcomes. Team Attack Defence Arsenal 1.37 -0.91 Aston Villa 0.69 -0.85 Blackburn 0.94 -0.47 Bolton 0.92 -0.48 Chelsea 1.23 -0.97 Everton 0.94 -1.15 Fulham 0.93 -0.89 Liverpool 0.89 -1.13 Man City 1.56 -1.43 Man United 1.52 -1.31 Newcastle 1.10 -0.88 Norwich 1.02 -0.62 QPR 0.82 -0.65 Stoke 0.64 -0.87 Sunderland 0.86 -0.99 Swansea 0.85 -0.89 Tottenham 1.24 -1.09 West Brom 0.86 -0.88 Wigan 0.81 -0.71 Wolves 0.79 -0.42 Home 0.27 Rho -0.13 # Statistics I don’t believe in Oslo is one of the candidate cities for hosting the 2022 winter Olympics, and of course there is a lot of discussion going on whether it costs too much etc. Opinion polls are conducted regularly, and the current status is that the majority of people don’t want Oslo to host the games. A couple of weeks ago the office dealing with the application put up the data from all polls conducted this year. What is weird is that they choose to illustrate the article detailing the data with the results from the question Do you wish that Norway should continue to participate in the winter Olympics and Paralympics? where only 73% of the respondents answered yes and 19% answered no. First of all I thought the question was silly. Of course no one want Norway not to participate, but then the results show that almost one in five don’t want Norway to participate. At first i thought that it might be just a fluke, but then I downloaded the data and saw that this question had been asked on three occasions, and the results were pretty similar: Even after seeing the consistent trend, I still don’t believe the numbers are correct. I think this shows one of the potential pitfalls in opinion polls. Since it is really hard to get the nuances of peoples beliefs in questions with just a few possible answers, it may be tempting to ask more detailed questions. The danger is that the questions become more confusing, or they even become irrelevant. I think both these things are can explain what is going on here. # Two Bayesian regression models for football results Last fall I took a short introduction course in Bayesian modeling, and as part of the course we were going to analyze a data set of our own. I of course wanted to model football results. The inspiration came from a paper by Gianluca Baio and Marta A. Blangiardo Bayesian hierarchical model for the prediction of football results (link). I used data from Premier League from 2012 and wanted to test the predictions on the last half of the 2012-23 season. With this data I fitted two models: One where the number of goals scored where modeled using th Poisson distribution, and one where I modeled the outcome directly (as home win, away win or draw) using an ordinal probit model. As predictors I used the teams as categorical predictors, meaning each team will be associated with two parameters. The Poisson model was pretty much the same as the first and simplest model described in Baio and Blangiardo paper, but with slightly more informed priors. What makes this model interesting and different from the independent Poisson model I have written about before, apart from being estimated using Bayesian techniques, is that each match is not considered as two independent events when the parameters are estimated. Instead a correlation is implicitly modeled by specifying the priors in a smart way (see figure 1 in the paper, or here), thereby modeling the number of goals scored like a sort-of-bivariate Poisson. Although I haven’t had time to look much into it yet, I should also mention that Baio and Blangiardo extended their model and used it this summer to model the World Cup. You can read more at Baio’s blog. The ordinal probit model exploits the fact that the outcomes for a match can be thought to be on an ordinal scale, with a draw (D) considered to be ‘between’ a home win (H) and an away win (A). An ordinal probit model is in essence an ordinary linear regression model with a continuous response mu, that is coupled with a set of threshold parameters. For any value of mu the probabilities for any category is determined by the cumulative normal distribution and the threshold values. This is perhaps best explained with help from a figure: Here we see an example where the predicted outcome is 0.9, and the threshold parameters has been estimated to 0 and 1.1. The area under the curve is then the probability of the different outcomes. To model the match outcomes I use a model inspired by the structure in the predictors as the Poisson model above. Since the outcomes are given as Away, Draw and Home, the home field advantage is not needed as a separate term. This is instead implicit in the coefficients for each team. This gives the coefficients a different interpretation from the above model. The two coefficients here can be interpreted as the ability when playing at home and the ability when playing away. To get this model to work I had to set the constrains that the threshold separating Away and Draw were below the Draw-Home threshold. This implies that a good team would be expected to have a negative Away coefficient and a positive Home coefficient. Also, the intercept parameter had to be fixed to an arbitrary value (I used 2). To estimate the parameters and make predictions I used JAGS trough the rjags package. For both models, I used the most credible match outcome as the prediction. How well were the last half of the 2012-13 season predictions? The results are shown in the confusion table below. Confusion matrix for Poisson model  actual/predicted A D H A 4 37 11 D 1 35 14 H 0 38 42 Confusion matrix for ordinal probit model  actual/predicted A D H A 19 0 33 D 13 0 37 H 10 0 70 The Poisson got the result right in 44.5% of the matches while the ordinal probit got right in 48.9%. This was better than the Poisson model, but it completely failed to even consider draw as an outcome. Ordinal probit, however, does seem to be able to predict away wins, which the Poisson model was poor at. Here is the JAGS model specification for the ordinal probit model. model { for( i in 1:Nmatches ) { pr[i, 1] <- phi( thetaAD - mu[i] ) pr[i, 2] <- max( 0 , phi( (thetaDH - mu[i]) ) - phi( (thetaAD - mu[i]) ) ) pr[i, 3] <- 1 - phi( (thetaDH - mu[i]) ) y[i] ~ dcat(pr[i, 1:3]) mu[i] <- b0 + homePerf[teamh[i]] + awayPerf[teama[i]] } for (j in 1:Nteams){ homePerf.p[j] ~ dnorm(muH, tauH) awayPerf.p[j] ~ dnorm(muA, tauA) #sum to zero constraint homePerf[j] <- homePerf.p[j] - mean(homePerf.p[]) awayPerf[j] <- awayPerf.p[j] - mean(awayPerf.p[]) } thetaAD ~ dnorm( 1.5 , 0.1 ) thetaDH ~ dnorm( 2.5 , 0.1 ) muH ~ dnorm(0, 0.01) tauH ~ dgamma(0.1, 0.1) muA ~ dnorm(0, 0.01) tauA ~ dgamma(0.1, 0.1) #predicting missing values predictions <- y[392:573] }  And here is the R code I used to run the above model in JAGS. library('rjags') library('coda') #load the data dta <- read.csv('PL_1213.csv') #Remove the match outcomes that should be predicted to.predict <- 392:573 #this is row numbers observed.results <- dta[to.predict, 'FTR'] dta[to.predict, 'FTR'] <- NA #list that is given to JAGS data.list <- list( teamh = as.numeric(dta[,'HomeTeam']), teama = as.numeric(dta[,'AwayTeam']), y = as.numeric(dta[, 'FTR']), Nmatches = dim(dta)[1], Nteams = length(unique(c(dta[,'HomeTeam'], dta[,'AwayTeam']))), b0 = 2 #fixed ) #MCMC settings parameters <- c('homePerf', 'awayPerf', 'thetaDH', 'thetaAD', 'predictions') adapt <- 1000 burnin <- 1000 nchains <- 1 steps <- 15000 thinsteps <- 5 #Fit the model #script name is a string with the file name where the JAGS script is. jagsmodel <- jags.model(script.name, data=data.list, n.chains=nchains, n.adapt=adapt) update(jagsmodel, n.iter=burnin) samples <- coda.samples(jagsmodel, variable.names=parameters, n.chains=nchains, thin=thinsteps, n.iter=steps) #Save the samples save(samples, file='bayesProbit_20131030.RData') #print summary summary(samples)  # A short summer update Hi everybody, I haven’t had written much lately as I have been busy with other things, so this is just a short update on what is going on with my life. This May I handed in my M.Sc. thesis in bioinformatics at the Norwegian University of Life Sciences. In it I investigated the prevalence of cis-regulatory elements (CREs) in plant promoters across 25 species. CREs are short DNA sites (typically around 12 base pairs long) that plays a role in gene regulation. They typically work by having high binding affinity for proteins that somehow regulates RNA transcription. I used genomic data (sequences and annotations) from the PLAZA server. I then predicted CREs by using motifs from the JASPAR, AtcisDB and PLACE databases. I then investigated whether predicted CREs that was found to be conserved in many gene families were more co-expressed than CREs that were not conserved and conserved only in a few families. I found that in general, this was not the case. Right after my thesis was done I started my new job as a statistician in the Department of Health Services Research at Akershus University Hospital right outside Oslo. I am very exited about this as I get to work on a lot of interesting and meaningful research projects with a bunch of really great people. I also spent a week backpacking in Belgium this summer with my girlfriend. The atmosphere was great in Brussels when Belgium beat the US in the World Cup, the weather was nice when we hiked in the Ardennes near the French border and everything was excellent when we rode our bikes in Bruges. Antwerp had the best food and the most beautiful train station I have ever been to. The most bizarre thing we experienced was perhaps the Bruggian love for embroidered cats dressed as humans: Until next time! # Predicting football results with Adaptive Boosting Adaptive Boosting, usually referred to by the abbreviation AdaBoost, is perhaps the best general machine learning method around for classification. It is what’s called a meta-algorithm, since it relies on other algorithms to do the actual prediction. What AdaBoost does is combining a large number of such algorithms in a smart way: First a classification algorithm is trained, or fitted, or its parameters are estimated, to the data. The data points that the algorithm misclassifies are then given more weight as the algorithm is trained again. This procedure is repeated a large number of times (perhaps many thousand times). When making predictions based on a new set of data, each of the fitted algorithms predict the new response value, and a the most commonly predicted value is then considered the overall prediction. Of course there are more details surrounding the AdaBoost than this brief summary. I can recommend the book The Elements of Statistical Learning by Hasite, Tibshirani and Friedman for a good introduction to AdaBoost, and machine learning in general. Although any classification algorithm can be used with AdaBoost, it is most commonly used with decision trees. Decision trees are intuitive models that make predictions based on a combination of simple rules. These rules are usually of the form “if predictor variable x is greater than a value y, then do this, if not, do that”. By “do this” and “do that” I mean continue to a different rule of the same form, or make a prediction. This cascade of different rules can be visualized with a chart that looks sort of like a tree, hence the tree metaphor in the name. Of course Wikipedia has an article, but The Elements of Statistical Learning has a nice chapter about trees too. In this post I am going to use decision trees and AdaBoost to predict the results of football matches. As features, or predictors I am going to use the published odds from different betting companies, which is available from football-data.co.uk. I am going to use data from the 2012-13 and first half of the 2013-14 season of the English Premier League to train the model, and then I am going to predict the remaining matches from the 2013-14 season. Implementing the algorithms by myself would of course take a lot of time, but luckily they are available trough the excellent Python scikit-learn package. This package contains lots of machine learning algorithms plus excellent documentation with a lot of examples. I am also going to use the pandas package for loading the data. import numpy as np import pandas as pd dta_fapl2012_2013 = pd.read_csv('FAPL_2012_2013_2.csv', parse_dates=[1]) dta_fapl2013_2014 = pd.read_csv('FAPL_2013-2014.csv', parse_dates=[1]) dta = pd.concat([dta_fapl2012_2013, dta_fapl2013_2014], axis=0, ignore_index=True) #Find the row numbers that should be used for training and testing. train_idx = np.array(dta.Date < '2014-01-01') test_idx = np.array(dta.Date >= '2014-01-01') #Arrays where the match results are stored in results_train = np.array(dta.FTR[train_idx]) results_test = np.array(dta.FTR[test_idx])  Next we need to decide which columns we want to use as predictors. I wrote earlier that I wanted to use the odds for the different outcomes. Asian handicap odds could be included as well, but to keep things simple I am not doing this now. feature_columns = ['B365H', 'B365D', 'B365A', 'BWH', 'BWD', 'BWA', 'IWH', 'IWD', 'IWA','LBH', 'LBD', 'LBA', 'PSH', 'PSD', 'PSA', 'SOH', 'SOD', 'SOA', 'SBH', 'SBD', 'SBA', 'SJH', 'SJD', 'SJA', 'SYH', 'SYD','SYA', 'VCH', 'VCD', 'VCA', 'WHH', 'WHD', 'WHA']  For some bookmakers the odds for certain matches is missing. In this data this is not much of a problem, but it could be worse in other data. Missing data is a problem because the algorithms will not work when some values are missing. Instead of removing the matches where this is the case we can instead guess the value that is missing. As a rule of thumb we can say that an approximate value for some variables of an observation is often better than dropping the observation completely. This is called imputation and scikit-learn comes with functionality for doing this for us. The strategy I am using here is to fill inn the missing values by the mean of the odds for the same outcome. For example if the odds for home win from one bookmaker is missing, our guess of this odds is going to be the average of the odds for home win from the other bookmakers for that match. Doing this demands some more work since we have to split the data matrix in three. from sklearn.preprocessing import Imputer #Column numbers for odds for the three outcomes cidx_home = [i for i, col in enumerate(dta.columns) if col[-1] in 'H' and col in feature_columns] cidx_draw = [i for i, col in enumerate(dta.columns) if col[-1] in 'D' and col in feature_columns] cidx_away = [i for i, col in enumerate(dta.columns) if col[-1] in 'A' and col in feature_columns] #The three feature matrices for training feature_train_home = dta.ix[train_idx, cidx_home].as_matrix() feature_train_draw = dta.ix[train_idx, cidx_draw].as_matrix() feature_train_away = dta.ix[train_idx, cidx_away].as_matrix() #The three feature matrices for testing feature_test_home = dta.ix[test_idx, cidx_home].as_matrix() feature_test_draw = dta.ix[test_idx, cidx_draw].as_matrix() feature_test_away = dta.ix[test_idx, cidx_away].as_matrix() train_arrays = [feature_train_home, feature_train_draw, feature_train_away] test_arrays = [feature_test_home, feature_test_draw, feature_test_away] imputed_training_matrices = [] imputed_test_matrices = [] for idx, farray in enumerate(train_arrays): imp = Imputer(strategy='mean', axis=1) #0: column, 1:rows farray = imp.fit_transform(farray) test_arrays[idx] = imp.fit_transform(test_arrays[idx]) imputed_training_matrices.append(farray) imputed_test_matrices.append(test_arrays[idx]) #merge the imputed arrays feature_train = np.concatenate(imputed_training_matrices, axis=1) feature_test = np.concatenate(imputed_test_matrices, axis=1)  Now we are finally ready to use the data to train the algorithm. First an AdaBoostClassifier object is created, and here we need to give supply a set of arguments for it to work properly. The first argument is classification algoritm to use, which is the DecisionTreeClassifier algorithm. I have chosen to supply this algorithms with the max_dept=3 argument, which constrains the training algorithm to not apply more than three rules before making a prediction. The n_estimators argument tells the algorithm how many decision trees it should fit, and the learning_rate argument tells the algorithm how much the misclassified matches are going to be up-weighted in the next round of decision three fitting. These two values are usually something that you can experiment with since there is no definite rule on how these should be set. The rule of thumb is that the lower the learning rate is, the more estimators you neeed. The last argument, random_state, is something that should be given if you want to reproduce the model fitting. If this is not specified you will end up with slightly different trained algroithm each time you fit them. See this question on Stack Overflow for an explanation. At last the algorithm is fitted using the fit() method, which is supplied with the odds and match results. from sklearn.ensemble import AdaBoostClassifier from sklearn.tree import DecisionTreeClassifier adb = AdaBoostClassifier( DecisionTreeClassifier(max_depth=3), n_estimators=1000, learning_rate=0.4, random_state=42) adb = adb.fit(feature_train, results_train)  We can now see how well the trained algorithm fits the training data. import sklearn.metrics as skm training_pred = adb.predict(feature_train) print skm.confusion_matrix(list(training_pred), list(results_train))  This is the resulting confusion matrix:  Away Draw Home Away 164 1 0 Draw 1 152 0 Home 0 0 152 We see that only two matches in the training data is misclassified, one away win which were predicted to be a draw and one draw that was predicted to be an away win. Normally with such a good fit we should be wary of overfitting and poor predictive power on new data. Let’s try to predict the outcome of the Premier League matches from January to May 2014: test_pred = adb.predict(feature_test) print skm.confusion_matrix(list(test_pred), list(results_test))   Away Draw Home Away 31 19 12 Draw 13 10 22 Home 20 14 59 It successfully predicted the right match outcome in a bit over half of the matches. # Identifying gender bias in candidate lists in proportional representation elections The Norwegian parliamentary elections uses a system of proportional representation. Each county has a number of seats in parliament (based on number of inhabitants and area), and the number of seats given to each party almost proportional to the number of votes the party receives on that county. Since each party can win more than one seat the parties has to prepare a ranked list of people to be elected, where the top name is given the first seat, the second name given the second seat etc. Proportional representation systems like the Norwegian one has been show to be associated with greater gender balance in parliaments than other systems (see table 1 in this paper). Also, the proportion of women in the Norwegian Storting has also increased the last 30 years: Data source: Statistics Norway, table 08219. At the 1981 election, 26% of the elected representatives where women. At the 2013 election, the proportion was almost 40%. One mechanism that can explain this persistent female underrepresentation is that men are overrepresented at the top of the electoral lists. Inspired by a bioinformatics method called Gene Set Enrichment (GSEA) I am going to put this hypothesis to the test. The method is rather simple. Explained in general terms, this is how it works: First you need to calculate a score witch represents the degree of overrepresentation of a category near the top of the list. Each time you encounter an instance belonging to the category your testing you increase the score, otherwise you decrease it. To make the score be a measure of overrepsentation at the top of the list the increase and decrease must be weighted accordingly. The maximum score of this ‘running sum’ is the test statistic. Here I have chosen the function $$\frac{1}{\sqrt(i)}$$ where i is the number the candidate is on the list (number 1 is the top candidate). To calculate the p-value the same thing is done again repeatedly with different random permutations of the list. The proportion of times the score from these randomizations are greater or equal to the observed score is then the p-value. I am going to use this method on the election lists from Hordaland county from the 1981 and 2013 election. Hordaland had 15 seats in 1981, and 16 seats in 2013. 3 (20 %) women were elected in 1981 and 5 (31.3 %) in 2013. The election lists are available from the Norwegian Social Science Data Services and the National Library of Norway. Here are the results for each party at the two elections:  Party 2013 1981 Ap 1 (0.43) 3.58 (0.49) Frp 3.28 (0.195) 3.56 (0.49) H 1.018 (0.66) 3.17 (0.35) Krf 1.24 (0.43) 2.32(0.138) Sp 2.86 (0.49) 2.86 (0.48) Sv 1 (0.24) 0.29 (0.72) V 1.49 (0.59) 1.37 (0.29) The number shown is the score, while the p-value is in parenthesis. A higher score means a higher over representation of men at the top of the list. Even if we ignore problems with multiple testing, none of the parties have a significant over representation of men at the top if the traditional significance threshold of $$p \le 0.05$$ is used. This is perhaps unexpected, as at least the gender balance in the elected candidates after the 1981 election is significantly biased (p = 0.018, one sided exact binomial test). This really tells us that this method is not really powerful enough to make inferences about this kinds of data. I think one possible improvement would be to somehow score all lists in combination to find an overall gender bias. One could also try a different null model. The one I have used here has randomly shuffled the list in question, maintaining the bias in gender ratio (if any). Instead a the observed score could be compared to random samplings where each gender were sampled with equal probabilities. My final thought is that this whole significance testing approach is inappropriate. Even if the bias is statistical insignificant, it is still there to influence the gender ratio of the elected members of parliament. From looking at some of the lists and their scores, I will say that all scores greater than 1 at least indicate a positive bias towards having more men at the top. # The R code for the home field advantage and traveling distance analysis. I was asked in the comments on my Does traveling distance influence home field advantage? to provide the R code I used, because Klemens of the rationalsoccer blog wanted to do the analysis on some of his own data. I have refactored it a bit to make it easier to use. First load the data with the coordinates I posted last year. dta.stadiums <- read.csv('stadiums.csv')  I also assume you have data formated like the data from football-data.co.uk in a data frame called dta.matches. First wee need a way to calculate the distance (in kilometers) between the two coordinates. This is a function that does that. coordinate.distance <- function(lat1, long1, lat2, long2, radius=6371){ #Calculates the distance between two WGS84 coordinates. # #http://en.wikipedia.org/wiki/Haversine_formula #http://www.movable-type.co.uk/scripts/gis-faq-5.1.html dlat <- (lat2 * (pi/180)) - (lat1 * (pi/180)) dlong <- (long2 * (pi/180)) - (long1 * (pi/180)) h <- (sin((dlat)/2))^2 + cos((lat1 * (pi/180)))*cos((lat2 * (pi/180))) * ((sin((dlong)/2))^2) c <- 2 * pmin(1, asin(sqrt(h))) d <- radius * c return(d) }  Next, we need to find the coordinates where each match is played, and the coordinates for where the visting team comes from. Then the traveling distance for each match is calculated and put into the Distance column of dta.matches. coord.home <- dta.stadiums[match(dta.matches$HomeTeam, dta.stadiums$FDCOUK), c('Latitude', 'Longitude')] coord.away <- dta.stadiums[match(dta.matches$AwayTeam, dta.stadiums$FDCOUK), c('Latitude', 'Longitude')] dta.matches$Distance <- coordinate.distance(coord.home$Latitude, coord.home$Longitude,
coord.away$Latitude, coord.away$Longitude)


Here are two functions that is needed to calculate the home field advantage per match. The avgerage.gd function takes a data frame as an argument and computes the average goal difference for each team. The result should be passed to the matchwise.hfa function to calculate the the home field advantage per match.

avgerage.gd <- function(dta){
#Calculates the average goal difference for each team.

all.teams <- unique(c(levels(dta$HomeTeam), levels(dta$AwayTeam)))
average.goal.diff <- numeric(length(all.teams))
names(average.goal.diff) <- all.teams
for (t in all.teams){
idxh <- which(dta$HomeTeam == t) goals.for.home <- dta[idxh, 'FTHG'] goals.against.home <- dta[idxh, 'FTAG'] idxa <- which(dta$AwayTeam == t)
goals.for.away <- dta[idxa, 'FTAG']
goals.against.away <- dta[idxa, 'FTHG']

n.matches <- length(idxh) + length(idxa)
total.goal.difference <- sum(goals.for.home) + sum(goals.for.away) - sum(goals.against.home) - sum(goals.against.away)

average.goal.diff[t] <- total.goal.difference / n.matches
}
return(average.goal.diff)
}

matchwise.hfa <- function(dta, avg.goaldiff){
#Calculates the matchwise home field advantage based on the average goal
#difference for each team.

n.matches <- dim(dta)[1]
hfa <- numeric(n.matches)
for (idx in 1:n.matches){
hometeam.avg <- avg.goaldiff[dta[idx,'HomeTeam']]
awayteam.avg <- avg.goaldiff[dta[idx,'AwayTeam']]
expected.goal.diff <- hometeam.avg - awayteam.avg
observed.goal.diff <- dta[idx,'FTHG'] - dta[idx,'FTAG']
hfa[idx] <- observed.goal.diff - expected.goal.diff
}
return(hfa)
}


In my analysis I used data from several seasons, and the average goal difference for each team was calculated per season. Assuming you have added a Season column to dta.matches that is a factor indicating which season the match is from, this piece of code calculates the home field advantage per match based on the seasonwise average goal differences for each team (puh!). The home field advantage is out into the new column HFA.

dta.matches$HFA <- numeric(dim(dta.matches)[1]) seasons <- levels(dta.matches$Season)

for (i in 1:length(seasons)){
season.l <- dta.matches$Season == seasons[i] h <- matchwise.hfa(dta.matches[season.l,], avgerage.gd(dta.matches[season.l,])) dta.matches$HFA[season.l] <- h
}


At last we can do the linear regression and make a nice little plot.

m <- lm(HFA ~ Distance, data=dta.matches)
summary(m)

plot(dta.matches$Distance, dta.matches$HFA, xlab='Distance (km)', ylab='Difference from expected goals', main='Home field advantage vs traveling distance')
abline(m, col='red')